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chip dna concentrator columns  (Zymo Research)


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    Zymo Research chip dna concentrator columns
    Chip Dna Concentrator Columns, supplied by Zymo Research, used in various techniques. Bioz Stars score: 99/100, based on 1504 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/chip+dna+concentrator+columns/ChIP+DNA+Clean+%26+Concentrator/us12612662-369-6-10
    Average 99 stars, based on 1504 article reviews
    chip dna concentrator columns - by Bioz Stars, 2026-09
    99/100 stars

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    Purification:

    Article Title: Multi-tier signaling and epigenomic reprogramming orchestrate microglial inflammatory states and functions associated with demyelination
    Article Snippet: Nuclei were then gently resuspended on ice in 50 μl transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 μl Tagment DNA enzyme I (Illumina 15027865), in molecular grade water) and incubated at 37°C for 30 min on a PCR cycler. .. DNA was then purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205) and eluted with 10 μl of elution buffer. .. DNA was then amplified with PCR mix (1.25 μM for each of i5- and i7- indexed primers, from Mezger et al. 2018 , 0.6x SYBR Green I (Thermo Fisher Scientific S7563), 1x NEBNext High-Fidelity 2x PCR MasterMix, (NEB M0541)) for 9 cycles, run on gel for size selection of fragments (160-280 bp) as detailed above, and paired-end sequenced for 100 or 150 cycles on an Illumina NovaSeq X Plus or NovaSeq 6000 (Illumina, San Diego, CA) according to manufacturer’s instruction.

    Article Title: Mechanisms driving epigenetic and transcriptional responses of microglia in a neurodegenerative lysosomal storage disorder model
    Article Snippet: .. Pelleted nuclei were resuspended in 50 μL transposase reaction mix (47.5 μL ATAC lysis buffer and 2.5 μL Tagment DNA TDE1 enzyme I (Illumina, 20034197)) and incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research, D5205), eluted with 11 μL of elution buffer, and amplified using NEBNext High-Fidelity 2x PCR Master Mix (New England BioLabs, M0541) with the Nextera primer Ad1 (1.25 μM) and a unique barcoding primer Ad2 (1.25 μM) for 8-12 cycles. .. Resulting libraries were size selected by gel excision to 155–250 bp, purified and single-end sequenced using a HiSeq 4000 (Illumina) according to the manufacturer’s instructions.

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson's patient-derived midbrain neurons.
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High- fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single- end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: Human microglia maturation is underpinned by specific gene regulatory networks.
    Article Snippet: Pelleted nuclei were resuspended in 50 ml transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 ml Tagment DNA enzyme I (Illumina 15027865), and incubated at 37 C for 30 min on a heat block. .. For isolations resulting in under 30,000 microglia, microglia directly placed in 50 ml transposase reaction mix, as indicated above and incubated for 37 C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205), eluted with 11 ml of elution buffer, and amplified using NEBNext High-Fidelity 2x PCRMasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 mM) and a unique Ad2.n barcoding primer (1.25 mM) for 8-12 cycles. ..

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson’s patient–derived midbrain neurons
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High-fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single-end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: DNA repair site detection for personal genomics, epigenomics, and gene therapy
    Article Snippet: Nuclei were then resuspended in 50 μL transposase reaction mix (1× Tagment DNA buffer (Illumina 15027866), 2.5 μL Tagment DNA enzyme I (Illumina 15027865), in water) and incubated at 37° C. for 30 min on a PCR cycler. .. DNA was then purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205) and eluted with 11 μL of elution buffer. .. DNA was then amplified with PCR mix (1.25 μM Nextera primer 1, 1.25 μM Nextera primer 2-bar code, 0.6×SYBR Green I (Life Technologies, S7563), 1×NEBNext High-Fidelity 2×PCR MasterMix, (NEBM0541)) for 9 cycles, run on an 10% TBE gels (Life Technologies) for size selection of fragments (165-250 bp), and were single-end sequenced for 51 cycles on an Illumina HiSeq 4000 (Illumina, San Diego, CA) ChIP-Seq ChIP-Seq was performed as previously described (Nott et al., Science 366:1134-9, 2019).

    Chromatin Immunoprecipitation:

    Article Title: Multi-tier signaling and epigenomic reprogramming orchestrate microglial inflammatory states and functions associated with demyelination
    Article Snippet: Nuclei were then gently resuspended on ice in 50 μl transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 μl Tagment DNA enzyme I (Illumina 15027865), in molecular grade water) and incubated at 37°C for 30 min on a PCR cycler. .. DNA was then purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205) and eluted with 10 μl of elution buffer. .. DNA was then amplified with PCR mix (1.25 μM for each of i5- and i7- indexed primers, from Mezger et al. 2018 , 0.6x SYBR Green I (Thermo Fisher Scientific S7563), 1x NEBNext High-Fidelity 2x PCR MasterMix, (NEB M0541)) for 9 cycles, run on gel for size selection of fragments (160-280 bp) as detailed above, and paired-end sequenced for 100 or 150 cycles on an Illumina NovaSeq X Plus or NovaSeq 6000 (Illumina, San Diego, CA) according to manufacturer’s instruction.

    Article Title: Mechanisms driving epigenetic and transcriptional responses of microglia in a neurodegenerative lysosomal storage disorder model
    Article Snippet: .. Pelleted nuclei were resuspended in 50 μL transposase reaction mix (47.5 μL ATAC lysis buffer and 2.5 μL Tagment DNA TDE1 enzyme I (Illumina, 20034197)) and incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research, D5205), eluted with 11 μL of elution buffer, and amplified using NEBNext High-Fidelity 2x PCR Master Mix (New England BioLabs, M0541) with the Nextera primer Ad1 (1.25 μM) and a unique barcoding primer Ad2 (1.25 μM) for 8-12 cycles. .. Resulting libraries were size selected by gel excision to 155–250 bp, purified and single-end sequenced using a HiSeq 4000 (Illumina) according to the manufacturer’s instructions.

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson's patient-derived midbrain neurons.
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High- fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single- end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: Human microglia maturation is underpinned by specific gene regulatory networks.
    Article Snippet: Pelleted nuclei were resuspended in 50 ml transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 ml Tagment DNA enzyme I (Illumina 15027865), and incubated at 37 C for 30 min on a heat block. .. For isolations resulting in under 30,000 microglia, microglia directly placed in 50 ml transposase reaction mix, as indicated above and incubated for 37 C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205), eluted with 11 ml of elution buffer, and amplified using NEBNext High-Fidelity 2x PCRMasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 mM) and a unique Ad2.n barcoding primer (1.25 mM) for 8-12 cycles. ..

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson’s patient–derived midbrain neurons
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High-fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single-end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: DNA repair site detection for personal genomics, epigenomics, and gene therapy
    Article Snippet: Nuclei were then resuspended in 50 μL transposase reaction mix (1× Tagment DNA buffer (Illumina 15027866), 2.5 μL Tagment DNA enzyme I (Illumina 15027865), in water) and incubated at 37° C. for 30 min on a PCR cycler. .. DNA was then purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205) and eluted with 11 μL of elution buffer. .. DNA was then amplified with PCR mix (1.25 μM Nextera primer 1, 1.25 μM Nextera primer 2-bar code, 0.6×SYBR Green I (Life Technologies, S7563), 1×NEBNext High-Fidelity 2×PCR MasterMix, (NEBM0541)) for 9 cycles, run on an 10% TBE gels (Life Technologies) for size selection of fragments (165-250 bp), and were single-end sequenced for 51 cycles on an Illumina HiSeq 4000 (Illumina, San Diego, CA) ChIP-Seq ChIP-Seq was performed as previously described (Nott et al., Science 366:1134-9, 2019).

    Article Title: The inactive X chromosome drives sex differences in microglial inflammatory activity in human glioblastoma
    Article Snippet: Pelleted nuclei were resuspended in 50 μl transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 μl Tagment DNA enzyme I (Illumina 15027865), and incubated at 37°C for 30 min on a heat block. .. Microglia were directly placed in 50 μl transposase reaction mix for isolations resulting in under 30,000 microglia and incubated for 37°C for 30 min. Zymo ChIP DNA concentrator columns (Zymo Research D5205) were used to purify DNA, followed by elution with 11 μl of elution buffer, and amplification using NEBNext High-Fidelity 2x PCR MasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8-12 cycles. ..

    Lysis:

    Article Title: Mechanisms driving epigenetic and transcriptional responses of microglia in a neurodegenerative lysosomal storage disorder model
    Article Snippet: .. Pelleted nuclei were resuspended in 50 μL transposase reaction mix (47.5 μL ATAC lysis buffer and 2.5 μL Tagment DNA TDE1 enzyme I (Illumina, 20034197)) and incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research, D5205), eluted with 11 μL of elution buffer, and amplified using NEBNext High-Fidelity 2x PCR Master Mix (New England BioLabs, M0541) with the Nextera primer Ad1 (1.25 μM) and a unique barcoding primer Ad2 (1.25 μM) for 8-12 cycles. .. Resulting libraries were size selected by gel excision to 155–250 bp, purified and single-end sequenced using a HiSeq 4000 (Illumina) according to the manufacturer’s instructions.

    Incubation:

    Article Title: Mechanisms driving epigenetic and transcriptional responses of microglia in a neurodegenerative lysosomal storage disorder model
    Article Snippet: .. Pelleted nuclei were resuspended in 50 μL transposase reaction mix (47.5 μL ATAC lysis buffer and 2.5 μL Tagment DNA TDE1 enzyme I (Illumina, 20034197)) and incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research, D5205), eluted with 11 μL of elution buffer, and amplified using NEBNext High-Fidelity 2x PCR Master Mix (New England BioLabs, M0541) with the Nextera primer Ad1 (1.25 μM) and a unique barcoding primer Ad2 (1.25 μM) for 8-12 cycles. .. Resulting libraries were size selected by gel excision to 155–250 bp, purified and single-end sequenced using a HiSeq 4000 (Illumina) according to the manufacturer’s instructions.

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson's patient-derived midbrain neurons.
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High- fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single- end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: Human microglia maturation is underpinned by specific gene regulatory networks.
    Article Snippet: Pelleted nuclei were resuspended in 50 ml transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 ml Tagment DNA enzyme I (Illumina 15027865), and incubated at 37 C for 30 min on a heat block. .. For isolations resulting in under 30,000 microglia, microglia directly placed in 50 ml transposase reaction mix, as indicated above and incubated for 37 C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205), eluted with 11 ml of elution buffer, and amplified using NEBNext High-Fidelity 2x PCRMasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 mM) and a unique Ad2.n barcoding primer (1.25 mM) for 8-12 cycles. ..

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson’s patient–derived midbrain neurons
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High-fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single-end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: The inactive X chromosome drives sex differences in microglial inflammatory activity in human glioblastoma
    Article Snippet: Pelleted nuclei were resuspended in 50 μl transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 μl Tagment DNA enzyme I (Illumina 15027865), and incubated at 37°C for 30 min on a heat block. .. Microglia were directly placed in 50 μl transposase reaction mix for isolations resulting in under 30,000 microglia and incubated for 37°C for 30 min. Zymo ChIP DNA concentrator columns (Zymo Research D5205) were used to purify DNA, followed by elution with 11 μl of elution buffer, and amplification using NEBNext High-Fidelity 2x PCR MasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8-12 cycles. ..

    Amplification:

    Article Title: Mechanisms driving epigenetic and transcriptional responses of microglia in a neurodegenerative lysosomal storage disorder model
    Article Snippet: .. Pelleted nuclei were resuspended in 50 μL transposase reaction mix (47.5 μL ATAC lysis buffer and 2.5 μL Tagment DNA TDE1 enzyme I (Illumina, 20034197)) and incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research, D5205), eluted with 11 μL of elution buffer, and amplified using NEBNext High-Fidelity 2x PCR Master Mix (New England BioLabs, M0541) with the Nextera primer Ad1 (1.25 μM) and a unique barcoding primer Ad2 (1.25 μM) for 8-12 cycles. .. Resulting libraries were size selected by gel excision to 155–250 bp, purified and single-end sequenced using a HiSeq 4000 (Illumina) according to the manufacturer’s instructions.

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson's patient-derived midbrain neurons.
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High- fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single- end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: Human microglia maturation is underpinned by specific gene regulatory networks.
    Article Snippet: Pelleted nuclei were resuspended in 50 ml transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 ml Tagment DNA enzyme I (Illumina 15027865), and incubated at 37 C for 30 min on a heat block. .. For isolations resulting in under 30,000 microglia, microglia directly placed in 50 ml transposase reaction mix, as indicated above and incubated for 37 C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research D5205), eluted with 11 ml of elution buffer, and amplified using NEBNext High-Fidelity 2x PCRMasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 mM) and a unique Ad2.n barcoding primer (1.25 mM) for 8-12 cycles. ..

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson’s patient–derived midbrain neurons
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High-fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single-end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: The inactive X chromosome drives sex differences in microglial inflammatory activity in human glioblastoma
    Article Snippet: Pelleted nuclei were resuspended in 50 μl transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 μl Tagment DNA enzyme I (Illumina 15027865), and incubated at 37°C for 30 min on a heat block. .. Microglia were directly placed in 50 μl transposase reaction mix for isolations resulting in under 30,000 microglia and incubated for 37°C for 30 min. Zymo ChIP DNA concentrator columns (Zymo Research D5205) were used to purify DNA, followed by elution with 11 μl of elution buffer, and amplification using NEBNext High-Fidelity 2x PCR MasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8-12 cycles. ..

    Polymerase Chain Reaction:

    Article Title: Mechanisms driving epigenetic and transcriptional responses of microglia in a neurodegenerative lysosomal storage disorder model
    Article Snippet: .. Pelleted nuclei were resuspended in 50 μL transposase reaction mix (47.5 μL ATAC lysis buffer and 2.5 μL Tagment DNA TDE1 enzyme I (Illumina, 20034197)) and incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research, D5205), eluted with 11 μL of elution buffer, and amplified using NEBNext High-Fidelity 2x PCR Master Mix (New England BioLabs, M0541) with the Nextera primer Ad1 (1.25 μM) and a unique barcoding primer Ad2 (1.25 μM) for 8-12 cycles. .. Resulting libraries were size selected by gel excision to 155–250 bp, purified and single-end sequenced using a HiSeq 4000 (Illumina) according to the manufacturer’s instructions.

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson's patient-derived midbrain neurons.
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High- fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single- end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: Vimentin network dysregulation mediates neurite deficits in SNCA duplication Parkinson’s patient–derived midbrain neurons
    Article Snippet: .. After the addition of 2.5 μl of DNA enzyme I (Illumina), the cells were incubated at 37°C for 30 min. DNA was purified with Zymo ChIP DNA concentrator columns (Zymo Research), eluted with 11 μl of elution buffer, and amplified using NEBNext High-fidelity 2× PCR MasterMix (New England BioLabs) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8 to 10 cycles. .. The resulting libraries were size selected by gel excision to 165 to 400 bp, purified, and single-end sequenced using a NovaSeq 6000 (Illumina) sequencer for 51 cycles according to the manufacturer’s instructions.

    Article Title: The inactive X chromosome drives sex differences in microglial inflammatory activity in human glioblastoma
    Article Snippet: Pelleted nuclei were resuspended in 50 μl transposase reaction mix (1x Tagment DNA buffer (Illumina 15027866), 2.5 μl Tagment DNA enzyme I (Illumina 15027865), and incubated at 37°C for 30 min on a heat block. .. Microglia were directly placed in 50 μl transposase reaction mix for isolations resulting in under 30,000 microglia and incubated for 37°C for 30 min. Zymo ChIP DNA concentrator columns (Zymo Research D5205) were used to purify DNA, followed by elution with 11 μl of elution buffer, and amplification using NEBNext High-Fidelity 2x PCR MasterMix (New England BioLabs M0541) with the Nextera primer Ad1 (1.25 μM) and a unique Ad2.n barcoding primer (1.25 μM) for 8-12 cycles. ..

    other:

    Article Title: NLRP3-mediated glutaminolysis controls microglial phagocytosis to promote Alzheimer's disease progression.
    Article Snippet: In brief How NLRP3 impacts Alzheimer’s disease (AD) is unclear.. McManus et al. find that NLRP3 is located atmitochondria where it regulates microglial metabolism.. Depletion or chronic pharmacological inhibition of NLRP3 increases glutamine utilization and a-ketoglutarate, which triggers downstream epigenetic changes allowing acetylation of target phagocytic and metabolic genes.



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